Are there any downsides to having a good metabolism?

I’m quite confident that many people, the OP possibly included, means something else by “fast (or “good”) metabolism”. Like it’s an innate thing, that is independent of how active you are.

Or maybe it’s an innate thing, that functions by making you more active.

Yeah.

I can reformulate my statement thusly:
Insofar as people have different metabolism rates, I doubt that it is caused by something on a molecular level. Instead I think it is caused by differences in activity levels.

Since most people are close to weight stasis, faster metabolism will mean a higher throughput of food. This has good effects, in that the person will get more vitamins and minerals. And bad effects, in that the person will get more toxins and carcinogens. My guess is that the good effects outweigh the bad.

Elements of metabolic rate (a good explanation is here):

Resting or Basal Metabolic Rate (RMR). Biggest factor for that is the “fat free mass” (FFM) of the body and some from the “fat mass” (FM) as well. Varies significantly between people based on factors other than those as well but per this article maybe not so much of the variation is from hormones:

The Thermic Effect of Food (TEF). We expend energy digesting the stuff. That varies with what is eaten but I do not think much between people.

The Thermic Effect of Activity (TEA). That’s things like exercise and work; purposeful acvity. Yes, it varies a lot between people but I do not think that is what you are talking about.

Non-Exercise Activity Thermogenesis (NEAT). Fidgeting. Standing at the counter rather than sitting down. Very different between people and interestingly responds differently to overfeeding: some people automatically and significantly increase NEAT when overfed; some do not. The former are very resistant to getting fat, even in a very obesogenic environment; the latter not. As the first link puts it:

So there is dynamic individual variation in RMR, TEA, and in NEAT that result in faster and slower metabolic rates. TEA is volitional; the other two not so much so.

The higher the metabolic rate, the more food taken in, the easier it is to get at least the minimum RDA for the various micro and macronutrients. Maintaining weight (not gaining), or more so losing weight, with a low metabolic rate means eating little and risking missing hitting those RDA values unless one also eats smart.