I’ve done some back-of-envelope calcs, and deformation is not a problem.
There’s two material issues. The first is that gold has a low yield point, i.e. it takes a relatively low stress to squidge it so it stays squidged. The second is that it has a low elastic stiffness, so it takes a relatively low stress to deform it like a rubber ball.
Now, when you place a perfect sphere on a perfectly flat plane, the contact area is zero, so the contact stress is infinity. That’s always the case, even for a hard steel ball-bearing on a glass sheet. So in the real world, the flat plate will fractionally deform into a cup, and the sphere will fractionally flatten and they conform to each other, creating a finite contact area.
With a ball-bearing on a glass sheet, these distortions are infinitessimal and elastic - lift the ball away and it pings back, as does the miniscule deformation in the glass. A plasticine ball on a balsawood plank OTOH may leave a permanently deformed ball and a dented plank.
There’s not much that can be done about the elastic stiffness of pure gold, but the yield point can be pushed up by work-hardening. Gold famously doesn’t work harden very much - that’s why it can be beaten so thin and drawn out into wire so easily. But if your gold ball factory squidges the ball into an ellipse, and then back into a ball, a few thousand times, changing the ellipse axis each time, the ball will work-harden.
Now, some mechanical data and calcs: from this pdf paper, section 3.1: http://composite.kaist.ac.kr/public/NPE91.pdf
Yield strength of annealed pure gold is 112 MPa
Yield strength of heavily work-hardened pure gold is 325 MPa
The ball exerts a force of 100,000 N, near enough. For soft annealed gold, using a conservative yield strength figure of 100 MPa, this means a cross-sectional area of 1/1000 square metres, or 10 square centimetres, will support the weight of the sphere. Or, a 4cm diameter, circular flat on the sphere will be enough to prevent any permanent deformation if you sit it on its flat. The 30cm deep cup is WAY overkill, a very shallow cup 4cm in diameter and 0.5mm deep is enough. And this is with annealed gold, no work hardening required!
I doubt the elastic distortion is enough to worry about, but if you insist on a perfect sphere, start off very slightly ellipsoid, park it on its point in the cup, and it will elastically deform into a sphere under its own weight. I really doubt you could tell by eye before and after.