::sigh:: You guys.
Draw a free-body diagram. It is clear that there is a net upward force on the aircraft that keeps it aloft. Therefore, there is a net downward force on the fluid medium (air) as a reaction. Air is, in one manner or another, pushed down. This is Newton.
Bernoulli’s principle, stated in English, merely says that increasing the velocity of a fluid results in a decrease in pressure. Bernoulli’s equation for inviscid, steady-state, incompressible flows relates velocity and pressure; taking into account enthalpy allows you to deal with compressible flows of ideal gases; other methods of approximation allow you to model real-world situations with some hope of accurately predicting the results.
This isn’t an issue of Bernoulli vs. Newton; Bernoulli is just a model that integrates Newton’s laws (and, in the expanded version, the ideal gas law and thermodynamics) into an equation with which you can analytically model the forces (or rather, pressures) upon a controlled fluid volume. It’s not that Bernoulli’s Principle is, er, in principle, incompatible with the phenomenon of lift on an aircraft wing, but as a model that depends upon a bounded volumetric measure, it is impossible to apply it analytically to an open-ended system; talking about the flow above and below the wing inherently splits the volume, and the behavior of each flow is mechanically dependant only on the surface of the wing over which it flows.
Generally, for approximate solutions to flow dynamics problems, some version of the Navier-Stokes equations are used, which apply boundary conditions and assumptions about viscidity to a network of approximately infinitesmal volumes; sort of an analog to structural finite element analysis, for those who savvy such things. (A more general method using energy methods and statistical mechanics gives a more realistic model but with enormous complexity that is beyond the scope of most CFD applications.)
Bernoulli describes flow under (or over) a wing, and the resultant forces on it (i.e. increased pressure on the bottom side of the wing resulting in net upward force) just fine and in fullness, as long as you are prepared to consider the total volume of the air passing under the wing to be in a controlled boundary. This “two particles of air seperating at the leading edge and meeting at the trailing edge” has no theoretical viability; while it is true that the air may appear to do that, it is of no relevence whatsoever, other than as an incidental result of the model, to the lift of their aircraft. In short, Bernoulli describes an effect, from first (Newtonian) principles. There is no conflict, unless you are one of those people who insist that a bubblebee can’t actually fly.
Stranger