OK, since you asked so nicely, I’ll refute it. Zero balls in the urn leads to a contradiction.
I’ll need some additional equipment. First, paint a big, red “A” on the urn, to distinguish it from a second urn, with a big, blue “B”. The second urn differs from the first in that it can only hold two balls, no more.
Place both urns in a box. The urns completely fill the box, and any ball which is in the box must be in one or the other urn. Likewise, any ball within an urn is also in the box. We have an infinite supply of balls outside the box, and both urns are initially empty.
Prior to minute 1, place two balls in urn B, and number them 1 and 2. At the first step (minute 1), the two balls are moved into urn A, and ball 1 is removed from urn A, placed in urn B, and the 1 is erased and a 3 is written on it. A ball from the infinite supply is also placed into urn B and a 4 is written on it.
At minute 2, these balls are moved into urn A, and ball 2 is moved from urn A to urn B, the two is erased from it and a 5 is written on it. A ball from the infinite supply is also placed into urn B and a 6 is written on it.
At minute 3, these balls are moved into urn A, and ball 3 is moved from urn A to urn B, the 3 is erased from it and a 7 is written on it. A ball from the infinite supply is also placed into urn B and an 8 is written on it.
…and so forth…
No balls are ever removed from the box.
After an infinite number of steps, we clearly have an infinite number of balls in the box. Urn B can only hold two balls, so if urn A is empty, there can only be two balls in the box. What happened to the infinite number of balls? Where are they?
Note that from the point of view of urn A, this case is identical with the OP. Only balls numbered with consecutive integers are ever placed in urn A, and the numbers never change while the balls are in urn A. Also note that any argument like “no ball remains since each one eventually gets removed” or “any number you can name isn’t in the urn” is a local argument. It requries no information about what is going on outside the urn, so the extra urn and the box have no bearing on the validity of such an argument.