I managed to get a B.S. in biology without ever hearing about this theory, but it looks like recapitulation theory means (to sum up the article): the evolutionary history of a species is observable in its embryonic development. If you look at the chart in the article, you will see that Haeckel made the developing human embryo look, in different phases, like a fish, a chicken, and a mouse.
This is all errant nonsense because humans did not evolve from fish, chicken, or mice. Assuming that life began only once, then every single organism alive on earth today is equally “evolved”, and none of them evolved “from” each other.
The fact that Haeckel’s drawings don’t represent what a developing human fetus actually looks like falsifies his idea that we resemble other creatures, in our early development.
Now. On to kosher evolution (and I’m sure that many others will come after me and fine-tune what I’m saying. Have patience. I specialized in neuroscience.) Darwin came up with his theory of evolution based on observable physical similarity between organisms. This was a good way to do science at the time he was doing it, without knowledge of DNA or powerful microscopes or all that fun stuff we did in sophomore labs. It is, however, a “common sense” approach and also very subjective–one can try to make the process of observing physical similarities into something quasi-scientific by taking prescribed measurements of certain body parts etc, and a lot of work is still done that way, buuuuuut…
DNA analysis is such a powerful tool that a great deal of the phylogenetic tree is being turned topsy-turvy by it. It’s being turned upside down because, it turns out, sometimes evolution is convergent. That means that two organisms with separate evolution histories happen to develop in the same way. This makes them appear–to the biologist working by physical observation–to be more closely related than they actually are. DNA sequencing is nifty because it appears that the DNA mutates at a steady and predictable rate. Therefore, looking at the DNA of two creatures that are very physically similar can reveal that they are in fact quite different. Often there are significant physiological differences, etc, also. It’s all about how powerful your tools of observation are.
To sum up and try to make a point, dismissing recapitulation theory as nonsense does not hurt the theory of evolution because all that throws out is Haeckel’s wacky idea that developing embryos somehow “relive” their species’ evolutionary history–which is a twisted exaggeration of what really happens, if not an outright fabrication. Now. Having dismissed recapitulation theory, we are left with observable physical similarity and with DNA evidence. If we throw out observable physical similarity–which a lot of biologists are doing–we lose much of the “common sense” force of evolution’s argument, and also lose most of the fossil record of extinct species, which I agree, is a significant blow to the evidence in evolution’s favor.
One still has observable instances of microevolution, DNA evidence, and other things to support the theory though–all of it more than enough to keep the scientific community convinced that evolution theory is correct.
Of course, one can still argue about its mechanism. Or something.