So, I observe that the space probe does not land on the asteroid. I suppose I observe this with instruments. (Obviously I cannot see the probe out there, even if I somehow see the asteroid.) Now, I have undoubtedly been observing the asteroid since before I launched the probe. I have logically determined a location and a logically chosen time at which the asteroid should have be. (If my logic is valid.) I also have a probe built and tested to act according to my logic, and operated so as to take it to the exact same place and time using the same logic and understanding of forces that provided me with those coordinates for the asteroid.
Now, I find my instruments do not report to me the expected stimuli which my logic predicted would indicate the intersection of those objects.
If logic must prevail over observation, then my logic must include at least one axiom that is hereby proven false. (Since my logic provides me with both the event, and the ability to observe it, any different outcome is a failure from a logical perspective, including an “optical illusion” that the probe missed.) A new set of axioms must be developed that have characteristics which allow logic to predict the observed facts. The new logic must then be exercised to predict a new probe and target, and a new intersection.
If observation must prevail over logic, then I must have failed to observe the original conditions or the resulting conditions accurately. From a scientific point of view, both possibilities should be examined. Turns out that the asteroid is a torus, and the probe just happened to pass through the hole. Or, I neglected to compute the effect of solar wind on the extended communications antenna, and the direction of my thrusts was off by a tiny percentage. Logic remains valid, but the conditions under which it applies are more stringent than my original axioms.
Neither logic, nor empiricism is “better” than the other. Observations of existing phenomena cannot, by themselves provide predictions of unobserved phenomena. Logic alone cannot create information about observed phenomena, or possible phenomena, other than to predict relationships between different sets of assumptions. Using both and using them as tests to each other can allow the creation and evaluation of new phenomena.
Perhaps my logic in this example included an unstated assumption that the extended antenna had no effect on the trajectory. That assumption was false. My logic is invalid.
But my observations were based on assumptions, so they are also invalid. My observations predicted a solid shape for the asteroid, not a torus. My observations were invalid. The absence of the stimuli expected did not mean that I missed the asteroid, but rather that the probe passed exactly through the center. A perfect solution, but not the expected phenomenon.
Tris