Yep, I was the one discussing Newtonian mechanics in the comics. 
My take is still that he would not have taken a whole lot of damage from either the punch or the impact with the wall. He just doesn’t have enough inertia. I’ve been pursuing further calculations (based, admittedly, on some SWAGs concerning heights, since the perspective in the relevant scenes make it hard to judge).
At her age, you’d expect Ellie to be around 5’ tall, but side-by-side shots with her mother suggest that she’s short for her age. Her mother doesn’t seem extraordinarily tall, and Ellie only comes up to her chest. Even if we assume Minerva is pretty tall, Ellie probably isn’t much over 4’. (Supporting this is that Will is significantly taller than Ellie; at age 12, boys average shorter than girls.)
Ellie’s head comes to the halfway point on the window, which is the conveniently about the same height at which the witch’s hand hit Newton. The strike was an upward backhand, so no downward vector was applied by the impact. To err on the conservative side, I’ll assume it imparted no upward vector either. That means that Newton was effectively in free-fall from the instant she hit him.
It appears that he hit the wall only inches above the floor–say, 6" (based on my estimates of Newton’s size elsewhere and Curry’s position in related frames). That means he fell 42" (3.5 ft) between the impacts.
d = 0.5 * g * t[sup]2[/sup]
3.5ft/(0.5 * 32ft/s[sup]2[/sup]) = t[sup]2[/sup]
t=0.47s
Again, to be conservative, let’s say his flight lasted 0.4s. Now we need to figure out how far he flew horizontally. After some measuring, and some more guessing, and some pondering of perspective, and some trig abuse I’m not going to try to reproduce here, I came up with a figure of about 8’ for the width of the room. Nudge it up to 10’ for the worst case, and to be mean to poor Newton.
So, now we can say that he traveled up to 10’ in as little as 0.4s. In that case, his average speed was 25ft/s. (For a point of reference, that’s around half as fast as you would expect Ellie to pitch a softball, if there were enough kids in town to make a team.)
Say Newton is roughly a foot tall; that means you’d have 3.3 Newtons/meter, so his spring constant is 3.3…er, never mind that.
Ahem. The point is, Newton is not hitting the wall all that fast, and he has very little momentum–only ~25 foot-pounds/second. Think of an adolescent casually lobbing a small beanbag at the wall. If he’d hit a person instead of a wall, he probably wouldn’t even have bruised them.
As for visible injuries–he might form visible bruising on his chest, centered where the witch’s knuckle hit. (With her hand open like that, it’s unlikely that more than one finger actually connected.) Probably no bruising on his back. Maybe a small bump on the back of his head, if that hit first, but my guess would be that his unconsciousness is actually the result of the initial strike hitting him at an angle that torqued his little brain around in his skull, the way a cross to the jaw can knock out a human.
My recommended depiction would be a sort of finger-shaped bruise on his chest and a really sore jaw that makes it hard for him to talk for a while.