I’m not sure where to start with this, because I think there are some misconceptions implicit in this question, but I’m not sure precisely where they are.
First off, the geodesics that are relevant in General Relativity aren’t the shortest paths through three-dimensional space; they’re the shortest distances through four-dimensional spacetime. And if we’re including time as a dimension, then the “surface of the Earth” is a three-dimensional structure, not two-dimensional.
Second, assuming that we’re only talking about spatial dimensions, here, and the bit about GR was just a digression (so the surface of the Earth is two-dimensional), the geodesics we’re discussing would be, by definition, along the surface of the Earth. And since the Earth isn’t perfectly spherical, the geodesics won’t be perfectly circular.
Third, if we do approximate the Earth as a sphere, so that, on that sphere, the geodesics are circles, then it would presumably make most sense to pick the sphere that most closely approximates the surface in some way (RMS deviation from the surface, or same volume, or something), in which case that approximating sphere would be above the actual surface in some places (mostly higher latitudes) and below the actual surface in others (mostly lower latitudes).
Fourth, are we discussing the solid Earth itself, or its gravity well? If its gravity well, the usual way of discussing it is via equipotential surfaces, surfaces along which there isn’t any “uphill” nor “downhill”, and something confined to the surface, set at rest on any point of it, would stay at that point. There are an infinite number of such surfaces, nested within each other; the one that most closely approximates sea level is usually called the “geoid” (you’d expect sea level to be exactly on an equipotential surface, but due to currents and such, there can be minor irregularities).