You better believe it. That part toward the end where they show how each man is missing Mary is heartwrenching, especially when Peter finds that impossibly tiny hard hat on his desk!
Mulan?
See Post #2. 
I’m not a manly weeper with a daughter (I’m actually a childless female), but I heartily second (or third or fourth) Mulan and A Little Princess (the newer one, that is). Two of my favorite movies ever.
I’d also like to add My Neighbor Totoro. It’s not really a tear-jerker, I guess, but it’s an awesome movie with father/daughters dynamic.
Even though Nemo is a boy, I’d say Finding Nemo* would get any parent. Also Life is Beautiful. [c]Cionderella Man* shows how far a father will go for his family, although he has two kids.
StG