Mr. Lissar says:
Re: the duck pond, the simplest explanation (to me) is that there used to be ducks in the pond, but that somehow the ducks were eaten by the crack, as were the clerics in Flesh and Stone, and therefore could not be remembered. Thus the pond would continue to be a duck pond even though the ducks had been erased from time.
Also, going back to the Eleventh Hour, there are a number of moments when the Doctor experiences a pang of some kind. We’re all used to him being a bit off after his regenerations, but the timing of the episodes seems key. For instance, when he’s talking about the duck pond, he careens backward into one of his regen-fits. He says something about not being ready, and we assume he’s referring to not having completed his regeneration, but if the duck-pond is the center of a complex time-space event (like the Pandorcia eating a nice duck dinner) that might mess with the Doctor. And earlier, when he’s talking to the 7 year old Amy and she asks him if he’s come about the crack in her wall, he tries to say, “What crack?” but a pang interrupts him.
The only other weird lapse from the Eleventh Hour was during the kitchen scene, but I think that was for comedic value. 
I love all the speculation about the jacket, the clock, and the idea of him carefully crossing his own time line. On a second viewing I agree about the jacket and the mood change in that scene with Amy. I’d like to add that he seems to be very quiet and careful then, like he’s afraid to draw attention to himself, which fits in nicely with crossing his own timeline.
Matt Smith has said in an interview somewhere that the Doctor and the TARDIS have always had a sort of telepathic, instinctive link, and that in this season they were trying to highlight that aspect of the story. Combined with what’s happening so far, with the “inaccuracy” of the TARDIS and all, I’d be inclined to think that the TARDIS has a feel for what they’re dealing with and has been nudging the Doctor around in an effort to help out. In fact, if we’re run with the crossing timeline idea, the TARDIS may be trying to prevent him from meeting himself at the wrong time! (I love thinking while I type!) That could mean that if the whole fallen soldier thing from Victory of the Daleks is something we’ll revisit (if it wasn’t just clumsy writing.)
Of course, the danger with over pondering these things is that you can build up these intricate possibilities for the series, only to be disappointed by how the plot actually plays out. That happened with me (Mr. Lissar) during the tenth Doctor’s final days. I was convinced that, whatever else happened, we’d get to see Cyber-Dalek hybrids who have survived the Void and either serve Satan or are fighting against him, and Satan has inhabited the Master’s body-consciousness, blah, blah. I was glad to have my expectations shattered because of some good acting. 
Mr. Lissar out.