Yes, the new-style viper has been Apollo’s ride for the series. It was retrofitted very early on to harden it against Cylon tampering.
Also, James Remar, playing Zarek’s #2, had a high-profile role a couple of years ago as the wealthy financier type on Sex and the City with whom Samantha had the closest thing she ever did to a long-term relationship. If he seemed familiar, maybe that’s where from.
As HPL says, they haven’t rejoined the people who will be mad at them for this stuff yet. Given the show’s attitude toward not dropping major plot threads (so far), I don’t expect this to go unremarked. However, seeing Adama’s newfound conciliatory attitude, it may not occur the way we expect it to.
(And how surprising is it to see a lead character in a series like this simply change his mind? Basically, recognize he’s going down a dead-end path, and reverse course? The standard hero model is to have the protagonist stay the course and bulldoze through difficulties and obstacles and triumph after all. This is a fascinating insight into Adama’s character, that he’s willing to admit, in public, when he’s wrong about something. I bet Roslin wouldn’t.)
Per Starbuck’s interrogation of Leoben last season, meat-toasters have some additional physical resources regular humans don’t.
Minor nitpick about the Hotdog-Racetrack asteroid snafu: When Racetrack found herself staring into an expanding debris field, why wouldn’t she back up and match the velocity of the rubble, making it easier to dodge, rather than flying straight into it and playing chicken with all the tumbling rocks?